Arthropod P450 Dokuwiki

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====== Folsomia candida ======
{{ ::folsomia.jpg?200|}}



    Subphylum   : Hexapoda
    Class       : Collembola
    Order       : Entomobryomorpha
    Superfamily : Isotomoidea
    Family      : Isotomidae

//Common name// : springtail

Taxonomy ID [[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=158441|158441]]

Annotation from assembly GCA 002217175.1, project LNIX01 and TSA GAMN01, GASX02

This is the assembly from the parthenogenetic Vrije Universiteit Amsterdam strain (Faddeeva-Vakhrusheva et al. 2017); Another genome from a sexual strain from Shanghai (Luan et al., 2022) is apparently a different species.

176 sequences can be downloaded in FASTA format {{ ::folsomia176.fasta |here}}. 
 
This FASTA includes six pseudogenes, one incomplete sequence (CYP4778A5-incN), one [[cyp19_clan|CYP19 clan]] sequence. One sequence is found as transcript (GASX02005442.1), but is not found in the annotated genome (CYP4810A2). 

Nine strange sequences are of possible viral origin, and close to the [[cyp51_clan|CYP51 clan]]: CYP5253E1P is a pseudogene,  CYP5253D1 is a Cfusion with OG-Fe(II) oxygenase superfamily domain (all in 2nd exon). CYP51272A1 is apparently also a fusion protein, with exons 6-9 being P450. 

The distribution of genes by CYP clan is tabulated [[CYPfam_by_clan|here]]