User Tools

Site Tools


droso_pse

Drosophila melanogaster P450 pseudogenes

CYP6A16P on chr. 2L has a frameshift mutation in the genome. NCBI proteins for CYP6A16 override this frameshift and claim : exception=“annotated by transcript or proteomic data” and “complex mutation, may be evolving pseudogene”.

The two versions are below:

Drosophila_melanogaster-CYP6A16P-genome MDFTLLLLTSLLSFLLGYLRYRFTYWELRGIPQLRPHFLFGHFFRLQSVHYSELLQETYDAFRGSAKVAGTYVFLRPMAVVLDLDLVKAVLIRDFNNFVDRRSFHGDPLTANLFNLQGEEWRNLRTKLSPTFTSGKMKYMFGTVSTVAQQLGGTFDELVGSQGAVLELHDLMARYTTDVIGSCAFGTECSSLREPQAEFRQVGRRIFRNSNRSIRWRIFKMTYLSSLAKLGLPVRILHPDITKFFNRIVRETVELRERENIRRNDFMDLLLDLRRXKGLTMEQMAAQAFVFFVAGFETSSSNMSYALFELAKNQDVQQKLRMEINDSIGKHGKLTYEAMMEMPYLDQTITETLRKYPALSSLTRLASEDYEIPSPDGGDPVVLEKGTSVHIPVLAIHYDPEVYPEPHEFRPERFAPDACRERHPTAFLGFGDGPRNCIGLRFGRMQVKVGLITLLRRFRFSLPPGSPTQLKVTKRNLILLPSDGVRLQVDPVESRLM

Drosophila_melanogaster-CYP6A16-NCBI-protein MDFTLLLLTSLLSFLLGYLRYRFTYWELRGIPQLRPHFLFGHFFRLQSVHYSELLQETYDAFRGSAKVAGTYVFLRPMAVVLDLDLVKAVLIRDFNNFVDRRSFHGDPLTANLFNLQGEEWRNLRTKLSPTFTSGKMKYMFGTVSTVAQQLGGTFDELVGSQGAVLELHDLMARYTTDVIGSCAFGTECSSLREPQAEFRQVGRRIFRNSNRSIRWRIFKMTYLSSLAKLGLPVRILHPDITKFFNRIVRETVELRERENIRRNDFMDLLLDLRRQENGKGLTMEQMAAQAFVFFVAGFETSSSNMSYALFELAKNQDVQQKLRMEINDSIGKHGKLTYEAMMEMPYLDQTITETLRKYPALSSLTRLASEDYEIPSPDGGDPVVLEKGTSVHIPVLAIHYDPEVYPEPHEFRPERFAPDACRERHPTAFLGFGDGPRNCIGLRFGRMQVKVGLITLLRRFRFSLPPGSPTQLKVTKRNLILLPSDGVRLQVDPVESRLM

CYP6A15P is a C-terminal gene fragment just upstream of CYP6A13 on chr. 2R

Drosophila_melanogaster-CYP6A15P AFTVTNSKLAKKLKMKILRDDLTDFFLSVVKPALSGMTLWTSPPSGGRSSRQGGSKFDLSHNWTLEQMAAQAIVFFLAGFETSSSTMSSCKYELALQPEI*NQIRDEIERVLEGNAITYDALAKINYPEQVLSETLRKHXXXQLIKFLLETQESFRVRNTELIVEKGTSLLIPVHSVHYDPHLYPHPKLFDSSRLKAYKSNSRHPFAYLPFGTFGPRSCIGLRFGKMQAKIGIVSALQXXXSDLTDIPLASDTRSAIVERI

CYP6T2P is very degraded pseudogene on chr. 2L with several frameshifts and gaps.

Drosophila_melanogaster-CYP6T2P MVIAFFIFLXCAALAVGSVVLLPLIALLAVWLWQRRHFRIWRRLGVPYLPAAPVLGNVLNVXCCFGDQFRELYERKEAAGRAIVGINVLHSHALLLRDPALIRRILVEDFPEFSSSFKSTDAIRDTMGSGNLLFTKYKTWWETHKIFAXLYGLLERI*QNLEAHMKKKXLNGAESVELEVKQLCALFTTDILQXXXSLQNPEAEFRPMCIEVNDPKPKRLSHHLFTXRVRTHLYSEEYERFMRKSMNYVLAQRAEN*EKRYDLIDMFLQMHRTETAEGIIHRPDFYVAQAAFXLLAGFDTSSSFALYELAKNPTIEHRLQAELRVDLQSSHNHQLSYDTLTGLVYLRQVLEDXXXLPFGAGPRGCIGTLLGQLGIKVGLLHTLKHFRVELCERTLPEMRFDP*ASVLTAHNGTFLRFVRNSL

CYP9F3P located just downstream of CYP9F2, this sequence has a deletion of part of exon 2 and 3, as well as intron 3. It lacks the heme-liganding Cys region, and with just 433 aa, it is a pseudogene.

Drosophila_melanogaster-CYP9F3P MLWEFLALFAIATALFYRWASANNDFFKDRGIAYEKPVLYLGNMAGMFLRKRAMLDIVCDLYTKGGSGKFFGIFAQRQPLLMVRDPDLIKQITIKDFDHFINHRNEFDTSSDDDPHDMSNLFSSSLFSMRDARWKDMRSTLSPAFTGSKMRQMFQLMNQVAKEAVDCLKQDDSRVQENELDMKDYCTRFTNDVIASTAFGLQVNSFKDRENTFYQMGKKLTTFTFLQNMKFILLFALKSLNKILKVEIFDRKSTQYFVRLVLDAMKYRQEHNIVRPDMINMLMEARGIIQTEKTKASAVREWSDRDIVAQCFVFFFAGFETSAVLMCFTAHELMENQDVQQRLYEEVQQVDQDLEGKELKYLDQVVSEVLRKWPPAIAFDRECNKXXXEAKAVIYYLLKDYRFAPAKKSCIPLELISSGFQLSPKGGFWIKLVQRN

droso_pse.txt · Last modified: 2024/12/19 12:58 by renefeyereisen