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harmigera

Helicoverpa armigera

  Class       : Insecta
  Infraclass  : Neoptera
  Order       : Lepidoptera
  Clade       : Ditrysia
  Superfamily : Noctuoidea
  Family      : Noctuidae

Common name : cotton bollworm

NCBI:txid29058

Annotation from assembly GCA_002156985.1, WGS project NHMN01. This is from the Australian CSIRO strain sequenced by Pearce et al., 2017

There are 113 manually curated and named sequences. This Australian strain of H. armigera is now considered to be subspecies H. a. conferta.

A FASTA file of the CYPome can be downloaded here

The distribution of genes by CYP clan is tabulated here.

A later assembly, GCA_023701775.1, WGS project JAHDYT01 was obtained from the African HaSCD2 strain sequenced by Zhang et al., 2022. The HaSCD2 CYPome was curated by Zhang et al., 2024 and is provided (with minor corrections) as FASTA file here. It has 117 sequences.

The differences between the two CYPomes are listed here:

The CYP337B3 sequence resulting from unequal crossing-over between CYP337B1 and B2, and found in fenvalerate-resistant strains (Joussen et al., 2012) is provided here:

>Helicoverpa_armigera-CYP337B3-AFO72906.1 MLFVILLTILIVLCSIVLHFKFTNSKYWKKKNIIQIKDLTFTFLFNKQSMPELIKSIYDKHDEPYIGTTSATIPTLIIKNLDDIQAVLAGDFQSFYSRGIITSPNDVLADNLLLMDDFKKWKLIRQKLTPIFTSAKLKNMFYIIEKSARDFVELVEDNVHLRKKPFKLMTRYTTASISAAVFGIDTQVKSTMESPFVELAFRALRPSFIQNVIVVIANTFPRLYKLLQLKLFGEHEEFFVGAVKTVLESRRHDTTKRYDFIEICLELQKNGIMQDFSTGYKLEPTDELMAAQAFFFFVAGADTSANTMHYSLLELSNNPKILAKLHEEIDKVFEGGAGELTYNDIDKLQYLDQVINEAMRKYPPIGVMQRLCTKDTVLPSGIPIAKGNTIMIPVFGLHRDEKYFDDPHVFDPDRFLPENVSKIKNYAYLPFGEGNRICIGVRFARLQVKAGLAWLLRRFTLVEQDNCIPEFEKSPFGLRSPDACYELKLRDI

harmigera.txt · Last modified: by renefeyereisen